NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307945_1027671

Scaffold Ga0307945_1027671


Overview

Basic Information
Taxon OID3300031404 Open in IMG/M
Scaffold IDGa0307945_1027671 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #228
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2978
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Discoba → Euglenozoa → Kinetoplastea → Metakinetoplastina → Trypanosomatida → Trypanosomatidae → Leishmaniinae → Leishmania → Leishmania → Leishmania donovani species complex → Leishmania infantum(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006096Metagenome381Y

Sequences

Protein IDFamilyRBSSequence
Ga0307945_10276711F006096N/AMYESQRHTRSGAGRGVSQANGATIYPKLTRLCQHKLVSEILIKWKQCGTAQASYGCLVGHVCMGVRISVFA

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