Scaffold Ga0307968_1023060

Overview

Basic Information

• Taxon OID: 3300031399
• Scaffold ID: Ga0307968_1023060
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #650
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3126
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050938	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307968_10230604	F050938	AGGA	MLYINSANEYPRHIGDVQLAKPSFKDGDTLPTGWVKVEESERPTAGTDQVTVEGTPAEVEGVMTQSWTVRDLTQAELDRRDAPANAKAKLIALGLTEAEVSALVQGLVR