NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307979_1040713

Scaffold Ga0307979_1040713


Overview

Basic Information
Taxon OID3300031398 Open in IMG/M
Scaffold IDGa0307979_1040713 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1357
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017945Metagenome237Y
F062324Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0307979_10407132F017945N/AMINSKTVSMKERIARIKTPSQRKETQPMKVNTPKAIKYLTKLKRGQTPLVKKLHNVLLAVRHQVITMQDFEELIKEYPEVVKLTNKGKESKLNGTLLSVQFYNKGSLEFTVILSEGKFYKFKKS
Ga0307979_10407134F062324N/AMQETNLGILLADFQNGTAKPSLKNYKTTLETGLRILELASYDLPVLNDIFKYNQGFNDLCSKVESYL

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