Scaffold Ga0307979_1038167

Overview

Basic Information

• Taxon OID: 3300031398
• Scaffold ID: Ga0307979_1038167
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1435
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018841	Metagenome	232	Y
F028317	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307979_10381671	F028317	N/A	MLSNHDIDELVVKMGIPNFKGYYFKDTLKKIEPNSSYILNLNSEYNEKN
Ga0307979_10381672	F018841	N/A	MNIALNLSASQLRNLRNGKGIRISPAMFGSGVDMIIDPMNYNNLLKKLERGKGAVMSMGNDELEENEIQGTGLFAGAGNKSGKISRRKKAGKWKDFAVETGRDGIDLARYGFEQYKEATNPLASEGKKALRGLSKMFGGEMEGENMEGDGFFKDLKKGYNRKVKNSKLGSALRETTGMLVSDAYDRGAKELGKNKYGKPLSQYMKDKRGSNVKKITGMTGVGLKVAGDGRMRKNPSWDYDRRMRPAVERTPDLPDRRMRPAVVRYDLSKLNLKHGKGLRMSANGLTMGGNCEMCGGSMNDKFLFADASL