NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307979_1035668

Scaffold Ga0307979_1035668


Overview

Basic Information
Taxon OID3300031398 Open in IMG/M
Scaffold IDGa0307979_1035668 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #1058
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1521
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F071822Metagenome121N
F102632Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0307979_10356681F102632N/AYEYLKSIPDLDKFNSIQVPMTEYQSILCELSITPIEAFVRDMIQDTPADVHELTYDSNELFDMFKCYLQRSNTKYEINLIKFGVRLTNLKLDGISKERGRAGVKKKFDVKLLKKHFMIGCQITE
Ga0307979_10356683F071822N/ATTENKVFELIHADQIQLFSNDNLKRAKFVLEDEYGTEIVLDSDDKLDIMLKIDYIDQGAITNQYISEQPMRL

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