Scaffold Ga0307979_1001811

Overview

Basic Information

• Taxon OID: 3300031398
• Scaffold ID: Ga0307979_1001811
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1058
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15084
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Dictyochophyceae → Rhizochromulinales → Rhizochromulina → Rhizochromulina marina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054478	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307979_100181124	F054478	N/A	RNPRKALHLESKSTAYTPKSAGSALVIGKIVLTMLVAAAKIIQSSIVPAFDQTRVPRIIQVPSGAANL