NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307960_1177977

Scaffold Ga0307960_1177977


Overview

Basic Information
Taxon OID3300031397 Open in IMG/M
Scaffold IDGa0307960_1177977 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #542
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001438Metagenome694Y

Sequences

Protein IDFamilyRBSSequence
Ga0307960_11779771F001438N/AGISDKLTSVTRDFTGKDVFTACFAIRSLDTNGNSNPVWAAHELNDGLRIIYAPRDSSAPVTFLTDNTRTDILDAPSPTYDPPLDMVIIVEGDIPSGTLKLWIDGNLVASETGVSFHPSWQTGVSRLFSSEGVFNEDLFAKVEIARGMEISRGLTASEFTDLLNWGQAGLDGTDVTDVFT

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.