NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307960_1038957

Scaffold Ga0307960_1038957


Overview

Basic Information
Taxon OID3300031397 Open in IMG/M
Scaffold IDGa0307960_1038957 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #542
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2152
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037002Metagenome168N
F052475Metagenome142Y

Sequences

Protein IDFamilyRBSSequence
Ga0307960_10389571F052475N/AMSESAKIANIHYIYQDRPNKQRANKMAKRKLGRLGYELDEANTGKDVLTAKRGNNVHINYSGTNINSPRDIISDAALATGVQRINPQFTDRRRTTRNIMRQYGDN
Ga0307960_10389574F037002N/AMSASYSLDTPYSSQVIFLNSQNSIYKSINGEGIYHYNLKTPVQLPTNCKMLLSIQDAQIPNISPNVTSSNNQLSFSIPTFSKFFTITVADEDGDRVYSADEFINVVNEKILPNALEQFTLYGVYQPTQAKVKWYCNYPFEIINNDSYPTTCIDLLGFQKDFNNNVVQTGDVLLSSKVNPSFHITMPSCVNFSGTRFIFLKFKNISVNNLNSKGLTDDAIVRIDNNVPFGYMIFYKPAEAHRFLVGKQTITSIQFTLTDTQGNDLNIFSNDAQITLKIEYIYKAE
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