Scaffold Ga0307963_1012436

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307963_1012436

Scaffold Ga0307963_1012436

Overview

Basic Information
Taxon OID	3300031394 Open in IMG/M
Scaffold ID	Ga0307963_1012436 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #594
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5877
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.4561	Long. (^o)	78.1899	Alt. (m)		Depth (m)	6
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020119	Metagenome	226	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307963_101243612	F020119	GGAG	MALSKSVMRNVARFRIRGHGLKCETGLYGRSPDRSARVCNLCENGDYIQDEKHVIFSCTGTEHLRHQFTHLFDNISEGDIKGFVFQHNSEVYKFISAVVDLFD

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