NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307967_1049624

Scaffold Ga0307967_1049624


Overview

Basic Information
Taxon OID3300031393 Open in IMG/M
Scaffold IDGa0307967_1049624 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #648
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1912
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011272Metagenome292N
F033656Metagenome176N

Sequences

Protein IDFamilyRBSSequence
Ga0307967_10496241F011272N/AMPCCYHSKRKGGRGVMIKKGKCGCGIKRMFRDGLAGLGKNAEKVKDDVAPRMKKATEAFKKFDGLQIDTSKGKPK
Ga0307967_10496243F033656N/ATGKEPLMETAVEVLEKYVTAKEQSGLDKTINLSGYGQTKIGDDLFPAFNYPEVMKRGFGMKGRQHNEELEAQAQLNSMPRVAFQVKKKGRPSVKIGKGIDVAIPQDTYKTFGKHLIHYPSLRDDFKLSIKYPSRSKNVGKVKVVSPEYRELLMDMLERGVLSDRMYDKLVNEEKEHFNQAVKASGLMETIKLKPIDEDKKDLVERFKVLRGQFIAGNNAPTLIKELRSVILHFMEKGQIQKQDGYDLLKELSAVEK

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