Scaffold Ga0307947_1000517

Overview

Basic Information

• Taxon OID: 3300031387
• Scaffold ID: Ga0307947_1000517
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #232
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27269
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (67.74%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002735	Metagenome	533	Y
F006096	Metagenome	381	Y
F051608	Metagenome	143	Y
F088015	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307947_100051716	F006096	AGGGGG	MSKNQRHMRSGAGHRVSQANGAVVHSKLPGLCQHEIVSEFLKKWKQCGAVQASYGCLVGHMCMGVRISVFAP
Ga0307947_100051731	F051608	GGA	MCSILISVPVTSVTYPELIRPSIPVMTHSLDQKVVARKAKARKFAAEVAGNVQAKVERQHRLLISFSVISPFRSIPQRYTKMCVICPHNSAGMVSFMWCQDLSSPQ
Ga0307947_10005174	F002735	AGG	MDKFSSKIHIMHMELGGKLLYFLRIKTHSLKGFRV
Ga0307947_10005179	F088015	GAGG	MGPSSGKEQQCGSHAKLSRLRVVDTYMHVCKERKGMSQRTGRSIRDQRCKELTSLLDGFSTLEAFLGPKAHHLSISRCAESYTLQ