NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307971_1176216

Scaffold Ga0307971_1176216


Overview

Basic Information
Taxon OID3300031382 Open in IMG/M
Scaffold IDGa0307971_1176216 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #714
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)602
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081963Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307971_11762162F081963N/AGGANSSAIGISIPSEIEILILGTVWAQENSLYRINGVQNTGVFDPGANSGTAGYRSAANNKTPPTVYTTLEEYGGIQIDRELTTEQFEKIEDYFELEVGITQ

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