NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308145_1007209

Scaffold Ga0308145_1007209


Overview

Basic Information
Taxon OID3300031378 Open in IMG/M
Scaffold IDGa0308145_1007209 Open in IMG/M
Source Dataset NameMetatranscriptome of marine microbial communities from Western Arctic Ocean, Canada - CBN3_319_33.10 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1626
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)80.9595Long. (o)-132.1842Alt. (m)Depth (m)139
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053558Metagenome / Metatranscriptome141Y
F074036Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0308145_10072092F053558N/AMVAKDAMSFQSQKDKRPLTSKKVANAPRVLKAGVAKSGNSSGREQIRNKINTLRKTGHIKDASNAIADMINLKSQQRK
Ga0308145_10072094F074036N/AFNTSFADDDTRRNLWVAFNMVDKIKGHLLSVMSSGKLAQADIEQLNKRS

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