Scaffold Ga0307444_1001500

Overview

Basic Information

• Taxon OID: 3300031360
• Scaffold ID: Ga0307444_1001500
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - SW1603-40
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10000
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.722
  • Long. (^o): -70.891
  • Depth (m): .4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008771	Metagenome / Metatranscriptome	328	Y
F009707	Metagenome / Metatranscriptome	314	Y
F066180	Metagenome / Metatranscriptome	127	Y
F070506	Metagenome	123	Y
F095978	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307444_100150010	F070506	GAG	VLGWISKTAPPLTKIDQLVDDAKIELKRVGIETEDKRSDEILKMAREKRNKPRVA
Ga0307444_100150011	F008771	N/A	MYSLIHPVTIYPSNHPPPQPITHPVFRVAVQGSEIVVTAPDSDYVMTYYMPADSLRLLAGSFPRKEDRSVSVTLADFLTAAWKLANDKARELGWIT
Ga0307444_100150012	F009707	GGAG	MTKQPDINTNTEWSKKDLFSLRNRIEHGRTVAHLVAFLMRSEAEVRTKAAELGLTLPDVPPSDESEQ
Ga0307444_10015008	F066180	GAGG	MASQYPVGGDDDPALLALEEAFYHVWTVLAAHDPYRDRTEDHDLRIELSRTLMVFVANGVRDVAELRRLGVESLSLPPSH
Ga0307444_10015009	F095978	GAG	MRTVQLAEALTASEQISTTLEDGSIVEGTLGFHPSGKGRFKVSYAGRSMMGMRSYIGVKYMRPGAMILLRQMADAGRVQGAPAKPAKSKSSQRKKRT