Scaffold Ga0265316_10016481

Overview

Basic Information

• Taxon OID: 3300031344
• Scaffold ID: Ga0265316_10016481
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6407
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004091	Metagenome / Metatranscriptome	453	Y
F059888	Metagenome	133	Y
F072410	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265316_100164811	F059888	N/A	GRRLRIEERSIKPEDALFVAGTLTENPGVQVRPYAPRDAHAHSSHMNDAGSSAPIAFSERRSSPQIVKLFGGATPSGSQQMSQQSKIAAALTRAGITRPEAWTAAGIPYQSVAVEENAPPTPVSAREEEQSKSSDFNLTPPVVLMKGARDPTFVISFRSQKELAVALAWKSAAMVWGGAAITLLGLYMLLRQMELL
Ga0265316_100164817	F004091	GGAG	MKKTLFILCLLSTTAAFAQYTAGVSALNSQPQVYQVPTHPAHANYTSMAGEQTVLATASYASAQGERPASDFPQPEAVSLGAYAREVRKQHTLLKKARVVWINQ
Ga0265316_100164819	F072410	N/A	SVLGALTKESFVPFSIVLTSTWWFSTRRDRNSERSRSRFLPDAAWILASWVLSVAAMTGLQRSITGRFVSPLQFGLALHRGGGGHFAVSLHDRNLWYIFLWLLPTAIPNLKRLPKSWLIPVGATCALAFVLDAYFGGAPTAGSSWGRALFSIAGPVLSLSSALFLLRISSSGQELWVRHPEVGKRQ