NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265316_10005255

Scaffold Ga0265316_10005255


Overview

Basic Information
Taxon OID3300031344 Open in IMG/M
Scaffold IDGa0265316_10005255 Open in IMG/M
Source Dataset NameRhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12642
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location NameUSA: Seattle, Washington
CoordinatesLat. (o)47.6516Long. (o)-122.3045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002448Metagenome / Metatranscriptome558Y
F007294Metagenome / Metatranscriptome353Y
F046491Metagenome / Metatranscriptome151Y
F053728Metagenome140Y
F088082Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0265316_1000525513F053728GGCGGVTAVLDWIGRIVRPSLRDSGPKSFMALVREHRAKSKVPTSKLYILHTDFEMSPDSYNNLQANLDVVREKYGIDFLILEPGFKLRRFDDY
Ga0265316_1000525514F088082AGGAMTIPEIADALERAPRQGADKDQPEGSRFVVFSDTVLDKMARELRLAAVDRPETETFEGRQ
Ga0265316_1000525516F007294GGAGMALTLAQLQANLDAINAAIGDPNWKSRSPEGAELTSRTIDELRKAKAEIEEDIRELSGAGGSRVRLAQHRRGDGPIGPTLIDWW
Ga0265316_100052556F002448GAGMINPKTILAEWVTSLRALPNLVAALGGDPTMVQFYSENITVFGQATQANVRLAILSMPVGSIMIVWNGSGPGRLGNAQVWTHEFAIYLRAPEVPDVGYEDLWTWIINDIPEGSTLRNLHIQIDPSCEPMDWKLPDARRNTIVISADGATFEYFAVNPIFLIESYNP
Ga0265316_100052558F046491N/AMSGWPTICARANLVLQNRFGKPVVYQPMQAGQPVGSPLTIVVIRRMRQRIEAGPVASLEEIEVNPIDLPNTPVRGDAVSAWGAQFTVTTVRQPDPYGMLLLSLTLRSG
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