NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307952_1057228

Scaffold Ga0307952_1057228


Overview

Basic Information
Taxon OID3300031343 Open in IMG/M
Scaffold IDGa0307952_1057228 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #376
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1488
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052207Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0307952_10572281F052207N/ASIIETTSLSNNSKFLDYNSAYLSVPLLVTLTSNTATQEGISTAMPYMKSVSFKQSFLSMINSITVDLNGQSMIQQNQLIDIYNHFRLLTSESWTTQNRWSSIGFYPDVVEYAGYATTNSKFGPANTTSNNGELNKGLTEKFKYILDDTDTMLTGVATSPLSTLMTKESLALLYASHLSTKEDGGATQSPVLQYSVKASIYLKDIHPLFEVIPISKSLNFKIQIFWNNAVATATHNALAWTGQTSQYRAYNGTLPLMLNNITDGFNGAPSGTLRASVYIGDTCHDSIQKGFTGVATGSVGKQVELHVQAVQMIPDMETSYVLNHVRDVSYHDYYQFTLKNIGGGDSFNHLVSNGISSLKAVLIVPQLNSKNNNVNVFDDGLPQSMGHINNFNVLIGGLNVLMQDSRYTYQSFNNEFFNEFGVNGNQSPGLGSSLIDYKSWLKKPYYYVNCSRVPKDQQMSYRSLQIKGTNASVLTMDYIIYAIYEKNITLDVVSGD

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