NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307932_1079552

Scaffold Ga0307932_1079552


Overview

Basic Information
Taxon OID3300031339 Open in IMG/M
Scaffold IDGa0307932_1079552 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)868
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056217Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307932_10795522F056217AGGMKLKVYHAQLRTLPAKRPSGVLAISGVVLEIAGIGDRRVYFSGSNNDSIYAYIRHNNKIVNISLSQYNRIWRYIEKRAIERGVVEFIRYN

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