NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307932_1035093

Scaffold Ga0307932_1035093


Overview

Basic Information
Taxon OID3300031339 Open in IMG/M
Scaffold IDGa0307932_1035093 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #48
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1380
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028028Metagenome193Y
F037291Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0307932_10350931F028028N/AMRRLYNLVGNSKYGDIKSGRYDKENHITAKYLKELKTECGEKCSYCECDLDWSDQQHIRRSKQVTLQRKNNKIGHIRGNCIYACFECNVIKRMECKEHLLTRFERDRLYNYEEIKLILY
Ga0307932_10350933F037291N/AIRDRVKKVDVFNPGYTLPFHQSIKVDKPVKKELDKKVTVHRVKGDIVSAYANKDTAFGAVAEYTNKDNNSDLSDKHALDTFMKTDL

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