Scaffold Ga0307430_1004473

Overview

Basic Information

• Taxon OID: 3300031337
• Scaffold ID: Ga0307430_1004473
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-130
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8235
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.759
  • Long. (^o): -70.891
  • Depth (m): 1.3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024933	Metagenome	204	Y
F098316	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307430_100447313	F098316	N/A	EVGLAYRRSDMLADWRSVNKLEIKEGTIRYVRKDRYPTEKTITAVEWEMSKEYMYKIQVHSVVRVGEPITERFVNIMSDVPLTPAMAEAEVEKQWGEWERYEAEEIVGLQTWSAVHKVME
Ga0307430_10044734	F024933	GGAG	MLKFKRITTATLTDGVETLADILAGMSGKDRHIVSIATAPLADMYLRVYRDAEQIVDCASIHLTTAAPLLPMDLPLAEGQQCKVGFYNNGAATTAKQITIGYTETG