NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307951_1039386

Scaffold Ga0307951_1039386


Overview

Basic Information
Taxon OID3300031335 Open in IMG/M
Scaffold IDGa0307951_1039386 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #374
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2021
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → Methylophilus → Methylophilus rhizosphaerae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041523Metagenome159Y
F043167Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0307951_10393861F041523N/AVKHIKPYKIFESNEPNFPTTKEGVIKVCEKYGIKNYTINDDLSIDVDGGVGLGDRG
Ga0307951_10393864F043167N/AETLRGCPLVVNANFLCDDNELKDLDYFPEVSGGIYIQDNPVCSLIYTFIYKPETDSFMIEDFVDYEIVRNRDTVMLDRLQTFIRDNDLEMPDLEDIKKHYKIIE

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