Scaffold Ga0307951_1001777

Overview

Basic Information

• Taxon OID: 3300031335
• Scaffold ID: Ga0307951_1001777
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #374
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13261
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.4561
  • Long. (^o): 78.1899
  • Depth (m): 6

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000607	Metagenome	992	Y
F078051	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307951_100177711	F000607	GGA	MDKFSSKFHRVHMELGGKLLNSLRIETQFLERLQSVCVVDGATHTQKDDVESNRGSLESVAEVFVLFLCGVQLVLRSGVLTILGLNEMNFMPSFTEVFRSVLCGVGGSASGWRYC
Ga0307951_10017778	F078051	GGGGG	MGGFLVERLASGGLGAGRNAWLTTRRNLISLCCFSFFLVSGGALASVSTS