NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307951_1001435

Scaffold Ga0307951_1001435


Overview

Basic Information
Taxon OID3300031335 Open in IMG/M
Scaffold IDGa0307951_1001435 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #374
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14515
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (36.84%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027704Metagenome193N

Sequences

Protein IDFamilyRBSSequence
Ga0307951_10014351F027704N/AEHLVRLRTQQQLIFPPQFEDGPARLRTFMNQPDIFGVASFVAECLALFPLFF

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