NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307969_1091438

Scaffold Ga0307969_1091438


Overview

Basic Information
Taxon OID3300031334 Open in IMG/M
Scaffold IDGa0307969_1091438 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #710
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)719
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011634Metagenome288Y
F080712Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307969_10914381F011634AGGMITERHNLACRMILKAISKTGSLGSCIVFKDIGSNERMTMQNLQIPETAESRTVPKWLFPPRFPDKDRFTSSRPDFVLVTPSAAKTQKQQTNVGGWVLRSGRGQL
Ga0307969_10914382F080712N/AMAHSPPPKLWYLPNHRAALQAHMHLLHKLGNAKTEANFHAYYQTLIKDGTANGAASNAYLTSSNVSFKTKCIIMKYRTGTLYNQKHAVLFKLSKVKLAPSTHK

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