NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307969_1055739

Scaffold Ga0307969_1055739


Overview

Basic Information
Taxon OID3300031334 Open in IMG/M
Scaffold IDGa0307969_1055739 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #710
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)972
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4563Long. (o)78.1898Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004242Metagenome / Metatranscriptome447Y
F030562Metagenome185Y

Sequences

Protein IDFamilyRBSSequence
Ga0307969_10557391F030562N/ANNAPFGYMIFYRPSEVQRFIIRKQTINNISFSLTDTQGNELNVFSNDTQITLKIEYMYKPEMRSMEEGTINYELRKLAQVPMTKEEIRGAYNPETNQFIRE
Ga0307969_10557392F004242N/AMRLGLKKPHMNRLGLKKSAHTMMRLGLKASDIALAAAPVALLGGPEMAPVSAALEAGGSAGKAVFGLGSKVV

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