NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307936_1116770

Scaffold Ga0307936_1116770


Overview

Basic Information
Taxon OID3300031333 Open in IMG/M
Scaffold IDGa0307936_1116770 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000656Metagenome956Y
F018128Metagenome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0307936_11167701F000656GGAGGMQMPHNGFDSLAAVARLNTDDTSHHRKRWPSLDWVWDELDDLRRWQDEAIDPDDYQKALDELDALTEQRDALSEAVRLLLEPEPDMERVQDILMGVGDD
Ga0307936_11167702F018128GGGGGMTDNAEQAARMRAMWSAVALTSLNDAIHHTARESKKNKGQALNNLALWLNSRNGREVLSLAGIDPDKRVTECMVAFAAKGVPPTMSRKKGVKL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.