NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307936_1095620

Scaffold Ga0307936_1095620


Overview

Basic Information
Taxon OID3300031333 Open in IMG/M
Scaffold IDGa0307936_1095620 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)847
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021053Metagenome220Y
F031768Metagenome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0307936_10956201F031768GAGGMSGAAIAAEVALAYAEAGRDAGDGTGAPIVTISRPGTPSGPEWNPTPGAPVNHVFVAKPSSKAY
Ga0307936_10956203F021053N/ATKHTSTYPGTLVMPDGTEVKSGDDVTISADLAKNEGVAGWIGIGWLVPMTAKAESDAKAAQPVMPTGKK

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