NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307936_1040139

Scaffold Ga0307936_1040139


Overview

Basic Information
Taxon OID3300031333 Open in IMG/M
Scaffold IDGa0307936_1040139 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1384
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011272Metagenome292N
F034424Metagenome174N

Sequences

Protein IDFamilyRBSSequence
Ga0307936_10401391F034424N/AEEKQHFNKAVKASGLMETIKLKPINEDKKDLVERFKVLRGQFIAGNNAPTLIKELRSVILHFMEKGQIQKQDGYDLLKELSAVEN
Ga0307936_10401393F011272N/AMPCCYHSKRKGGRGVMIKKGKSGCGIKRMFRDGLAGLGKDAEKVKDDVAPRMKKATEAFKKFDGLQIDTSKGKPKKYIS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.