Scaffold Ga0307936_1023872

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307936_1023872

Scaffold Ga0307936_1023872

Overview

Basic Information
Taxon OID	3300031333 Open in IMG/M
Scaffold ID	Ga0307936_1023872 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Organic Lake, Antarctica - #1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1823
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Organic Lake
Coordinates	Lat. (^o)	-68.457	Long. (^o)	78.1911	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F031320	Metagenome	182	N
F055327	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307936_10238721	F031320	GAGG	MTKLALNTETNGFIATVEHDPYGADESPREWAMESVFFGFNRSFASPDPAPDSDPENARDIATANDNICLPVWLYAHSGTCYRAAEKNP
Ga0307936_10238725	F055327	AGGAG	MENFTITHDATDFDIRVAFDLSPNMTIAEVARRSGKTVPEVKKILMGDYV

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