Scaffold Ga0307936_1021542

Overview

Basic Information

• Taxon OID: 3300031333
• Scaffold ID: Ga0307936_1021542
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1928
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007290	Metagenome	353	Y
F031320	Metagenome	182	N
F055327	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307936_10215421	F031320	GAGG	MTKLALDTVINGFTATVEHDPYGADESPREWAMESVFFGFHRAFASPDHAPDSDPETARDIATANDNICLPVWLYAHSGTCYRAAE
Ga0307936_10215422	F055327	AGGAG	MKNFTITNDATDFDIRVAFDLSPNMTIAELARRSGKTVPEVKKILMGDYV
Ga0307936_10215424	F007290	AGGA	MKYTVALSIAAKATAYLQENEGSMSETEMVVHISALHLALQEIAKHNSVELPPLP