Scaffold Ga0307936_1012283

Overview

Basic Information

• Taxon OID: 3300031333
• Scaffold ID: Ga0307936_1012283
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2632
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002904	Metagenome	522	Y
F039419	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307936_10122832	F002904	N/A	MRVDNCTEKGMSSMDKFSSKVHRVHMELGGKLLNSLRIKTQFFERLQSVGVVDGAAHTQKDDVESNGGSL
Ga0307936_10122834	F039419	GAG	MSDGVFIQFVCQSFNLMVIQIKVCQKFACVVFEDSPHSSNEDHVKLDFPISLPV