Scaffold Ga0307934_1045718

Overview

Basic Information

• Taxon OID: 3300031329
• Scaffold ID: Ga0307934_1045718
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #90
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1284
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029560	Metagenome	188	Y
F033322	Metagenome	177	Y
F054592	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307934_10457182	F054592	N/A	MLECVEEVNESKRFKAYFKDWTITKFGQTNPKTGTFIDHQDKQLKKTYIK
Ga0307934_10457183	F029560	GGA	MKGGNLRPQELKDFLQASYEINAPKTLDDYILDEKLSNLYGKVYVNEALKKFVLSFRGTGMENLGTDWINDLIFAISDPGYKLTTRYQTALKMYTSAMKKYQGYKFELLGIRYRE
Ga0307934_10457184	F033322	AGAAG	VSKLTVPKKALNSVSYPQWTKKHMVNIENITGNPITEHKVDILDRLNPNMVIGRGVGR