NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307934_1016327

Scaffold Ga0307934_1016327


Overview

Basic Information
Taxon OID3300031329 Open in IMG/M
Scaffold IDGa0307934_1016327 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #90
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2587
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014668Metagenome261Y
F018841Metagenome232Y
F068557Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307934_10163271F014668N/APLMLNNFTDGFNSAPLGTLRASVYVGDTCHDSTQKGLSGVEGGSVGKQVELHVQAVQMLEDIESNYTLNSVRDISYNDYYQFTLRNIQGGDSFNHLVSNAISNLKAVLIVPQLNSLNNNVNVFDDGLPQLMGHINNFNVLVGGVNVLMQDSRYTFQSFNNEFFNEFGVNGNQSRGLGSSLIDYKSWLHKPYYYVNCSRVPMEQQKAYRSLQIKGMNSSVLPMDYVIYAIYEKNFKLHVVSGNIDKIES
Ga0307934_10163272F018841N/AMNIALNLSANQLRNLRNGKGIRISPSMFGSGVDMIIDPMNYNNLMKKLERGKGAVMSMGNAELEENEIQGSGLFAGAGNKSGKISRIKKAKKWRDFSNETLRDGIDTAKYGYEQYKSAVNPIGSKVKSWFGGEMDMEMEGEGFLKDIKKGYNRKVKNSKLGKALRESSGKVIGDVYYRGAKELGKNKYGKPLSQYMKDKKGSNVKKITGMTGVGLRVAGEGRMKSAVVRPDLSKLNLKHGKGLRMDGGACEMCQGSGMQNDRFIFSDQAL
Ga0307934_10163274F068557N/AELAISFKTLALDIFKTLSLPNEDRGTDGLVYLNKVYNKYINLVENSTILNTMNKKDNLLVIDPNLLNIDDGSSLSSNGSNPITREENEL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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