Scaffold Ga0307934_1002393

Overview

Basic Information

• Taxon OID: 3300031329
• Scaffold ID: Ga0307934_1002393
• Source Dataset Name: Saline water microbial communities from Organic Lake, Antarctica - #90
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9954
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011272	Metagenome	292	N
F012843	Metagenome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307934_10023931	F012843	N/A	MNDRDKIMYYKNKYNITYFTTYEDLRRSIYNYEMKHFVDLVYSGKDINTHEYGLYLV
Ga0307934_100239313	F011272	N/A	MPCCYHSKRKGGRGVMIKKGKSGCGIKRMFRDGLAGLGKDAERVKDDVAPRMKKATEAFKKFDGLQIDTSKG