Scaffold Ga0307442_1035083

Overview

Basic Information

• Taxon OID: 3300031274
• Scaffold ID: Ga0307442_1035083
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-30
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1668
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.759
  • Long. (^o): -70.891
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008771	Metagenome / Metatranscriptome	328	Y
F009707	Metagenome / Metatranscriptome	314	Y
F066180	Metagenome / Metatranscriptome	127	Y
F070506	Metagenome	123	Y
F095978	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307442_10350831	F066180	GGTGG	MLSALEEAFYDVWTVLAAHEPYRDRTEDHERKIDLSRTLMAYAANGVRDVAELRRLGVKSLSLPPSH
Ga0307442_10350832	F095978	GAG	MRSVQLAEALTASEPISTTLEDGSIVEGTLGFHPSGKGRFKVSYAGKSIMGMRSYIGVEYMRPGAMILLRQMADAGRVQGAPAKPAKSKSGQRKKRT
Ga0307442_10350833	F070506	GAG	MNNKDSSPLTKIDQLVDDAKIELKRVGIETEGKRSDEILKMAREERNKPRVA
Ga0307442_10350835	F008771	N/A	MYSLIHPVTMYPSNRPPQPITHPVFRVAVQGTEIVVTAPDSDYVMTYYMPADSPKLLAGSFPRKEDRSVSMTLADFLTAAWKLANDKARELGWIT
Ga0307442_10350836	F009707	GGAG	MTEQPDINAGTEWSKKDLFSLRNRIEHGRTVAHLVTFLMRSEAEVRAKAAELGLTLPAAPPSDESQQ