NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307983_1067459

Scaffold Ga0307983_1067459


Overview

Basic Information
Taxon OID3300031269 Open in IMG/M
Scaffold IDGa0307983_1067459 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #991
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)644
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.457Long. (o)78.1911Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053834Metagenome140Y
F065935Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0307983_10674592F065935GGAGGMDDEISNKLYWTLGYDAGVELERERIIKVFQAKEAKRTIIEALEYPYTAQELEATIREGQDD
Ga0307983_10674593F053834GGAMSTSRARDSTQRTKMIEMKDISDKLYWTKGREAGVEVERNRIHKSIYGYFRLFDGASNRTHKISEAELMILIQTEEQNG

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