Scaffold Ga0307983_1044575

Overview

Basic Information

• Taxon OID: 3300031269
• Scaffold ID: Ga0307983_1044575
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #991
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 857
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → unclassified Campylobacterota → Epsilonproteobacteria bacterium JGI 0002006-B18 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013488	Metagenome	270	Y
F014478	Metagenome	262	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307983_10445751	F013488	N/A	RLKLVPEDVSISGKLVRLVHSRQALLKSDPEDVSIRGKLVRLLQLYQARSKLVPADVSIRGKLVRLWQLYQASEKLVPADVSISGKLVRLLQPRHALKKLVPADVSISGKLVRLEQSNQAAKKSVPADVSIGGKLVRLLQLYQARLKLVPADVSIRGKLVRLLQLYQA
Ga0307983_10445752	F014478	GAG	VSIGGKLVRLEQLYQAREKLVPADVSMSGKLVRLEQSRHVFTKLVPEDVSISGKLVRLLQLYQTRSKLVPEDVSISGKLVRLVQSRQAASKLVPADVSIGGKLVRPVQL