Scaffold Ga0307983_1030518

Overview

Basic Information

• Taxon OID: 3300031269
• Scaffold ID: Ga0307983_1030518
• Source Dataset Name: Marine microbial communities from Ellis Fjord, Antarctic Ocean - #991
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1114
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Organic Lake
• Coordinates
  • Lat. (^o): -68.457
  • Long. (^o): 78.1911
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007738	Metagenome	345	Y
F014583	Metagenome	261	N
F033324	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307983_10305182	F007738	GAGG	MSGAAIAAEVALAYAEAGRDAGDGVGAVSVTISRPGAPTGPEWNPTPGTPVVHTFTAKPAAKAYTQRTGLALGEGELVYSLVNHGVTIAPSTSDVLTIDGVNWPVQEVIPMDSAGFVISWMVKMAK
Ga0307983_10305183	F033324	N/A	MTDTAKRMMDDAKTDALFAAAHAALPGVKRQAELMAKMRRLHYDASIAQGFTPDAALILCMDCLAQK
Ga0307983_10305185	F014583	N/A	MTTRDTRKAFLKLLDDTWPGVQSEFVAAMRQARAGVDMKALEAAIARGDVDAAFRALRFDAADMF