Scaffold Ga0315556_1033441

Overview

Basic Information

• Taxon OID: 3300031256
• Scaffold ID: Ga0315556_1033441
• Source Dataset Name: Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2203
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location

• Location Name: USA: Massachusetts
• Coordinates
  • Lat. (^o): 42.722
  • Long. (^o): -70.847
  • Depth (m): .1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005789	Metagenome / Metatranscriptome	390	Y
F032367	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0315556_10334414	F032367	GGCGG	VSRKRDIKQFRQACKEAGLTARERREASEALHAEKEAGHVQRDMSYGELLDWLRQWRG
Ga0315556_10334415	F005789	GGA	MEGLMATAVTLDTSPINVLRSMRGSIVDARIAYPEVLHVEIKDSAGDLWQLATQDAEWSPSDPAELVGRSVTDADIDAETGELRCKLSDGSVLDVKPAEQEAEDDPPNWELITPGGVALEFGPGVRWQIGSADSRASSRA