NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315556_1032519

Scaffold Ga0315556_1032519


Overview

Basic Information
Taxon OID3300031256 Open in IMG/M
Scaffold IDGa0315556_1032519 Open in IMG/M
Source Dataset NameSalt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1603-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2242
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.722Long. (o)-70.847Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066180Metagenome / Metatranscriptome127Y
F070506Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0315556_10325192F070506GAGMDKKNSSPLTKIDQLVDDAKTELKRVGIETEGKRSDEILRMAREERNKPRVA
Ga0315556_10325193F066180AGGAGMASQYPVGDDDDPTLLALEEAFYDVWTVLAAHDPYRDRTEDHDRKVELSRTLMVFVANGVTDVAELRRLGVKSLSLPPSH

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