NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307494_1001242

Scaffold Ga0307494_1001242


Overview

Basic Information
Taxon OID3300031252 Open in IMG/M
Scaffold IDGa0307494_1001242 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2016
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y

Sequences

Protein IDFamilyRBSSequence
Ga0307494_10012421F005848N/ALPVQRTYTATVAALNAPVFMVDQQTLQNNFLTLTPNVLQDVVNLIDPAATQLLQYTLVKNGNATSVRAFSSAISATTAGRVPIGPVSMSSGSYQWQAVQTIGALFNGQILVRYGSPLN
Ga0307494_10012422F004537AGGAGMPFSNNIVNNYRINSGNTPLLYPVRVICPPGVTTGVSFPDQFLGRAISLKITNNDAANAASYDYNLNGQPQNLAASAFSTIDNTVVNYLTIIAGAAGTVLVEAQVLPASRSEVPIEVQV

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