Scaffold Ga0307494_1001181

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307494_1001181

Scaffold Ga0307494_1001181

Overview

Basic Information
Taxon OID	3300031252 Open in IMG/M
Scaffold ID	Ga0307494_1001181 Open in IMG/M
Source Dataset Name	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2068
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	71.3731	Long. (^o)	-156.5049	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F048645	Metagenome	148	Y
F105883	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307494_10011813	F048645	GAGG	MNLWMDQVPEKWFEFKHTISSFAFCTECDLYGEKQWNLEEEYDAVLIDAPWPAFPHKERWIWICLECFNGNIQP
Ga0307494_10011814	F105883	GAG	MGNFSQWVRIALRSYENGEDLATETMRRIKWAKVASILAATIVEHSIELDENYKGSVEELIAQAMKEVQNQTSLRDFE

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