Scaffold Ga0307494_1000775

Overview

Basic Information

• Taxon OID: 3300031252
• Scaffold ID: Ga0307494_1000775
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2532
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F002374	Metagenome / Metatranscriptome	566	Y
F009559	Metagenome	316	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307494_10007751	F009559	N/A	MDQFLLYASVFLASVSFFLCLYACARVGKLLKSVKGLEWDTIATLTGDVGTIKKSIQ
Ga0307494_10007753	F001611	AGGA	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVSSAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGNYVNNDLLTTGAMRNRVLVRFTNDTAATRTIRCGVFIG
Ga0307494_10007755	F002374	N/A	MDQFLLYASVFLASVSFFLCLYACARVGKLLKSVKGLEWDTIATLTGDVGTIKKSIQTLNNRINGLNSPKLNDDLLQYAIKQQSNVTDINKNSLGG