Scaffold Ga0308395_1063902

Overview

Basic Information

• Taxon OID: 3300031245
• Scaffold ID: Ga0308395_1063902
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 917
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006183	Metagenome / Metatranscriptome	379	Y
F024799	Metagenome / Metatranscriptome	204	Y
F056637	Metagenome / Metatranscriptome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308395_10639021	F024799	GAG	VPVTPGGKSENVAPVAPVVLYVIGVIAVSTQTVWLSVPGAEVRVMVLCRSHNDG
Ga0308395_10639023	F006183	GAG	VPVTPAGKSENVAPVAPVVLYVIGLIGVFTQTVWLFVPGAEVRVMVLLGRTMMVPLAVTFPQPPVKVTV
Ga0308395_10639024	F056637	N/A	PVVLYVIRVIAVFTQTVWLSVPGAEVRVMVLLGCTMMVPVAVTFPQPPVKVTV