NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1011093

Scaffold Ga0308395_1011093


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1011093 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3515
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079732Metagenome / Metatranscriptome115N
F091520Metagenome / Metatranscriptome107N
F106198Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10110932F106198N/AMSNNLSIQEIIRNRHAVKGKQYLMLYDTDFNTQLLIRQRFYFVPGDPDVFTPIPPVIEERLRPLNPKLGVPTALPFEPRECTACFDNPQVQQGFSEYKVFIPFRPTDYKLKQSIKEIMQLPNVSRVKYSGETHVRGTKKIV
Ga0308395_10110933F091520N/AVASYVGNYVNDVGIQYRNIVLNTYFYDNGNRISTTYDRDEMYLPTIFKSNTTRLLDKRATCQIEYSTLRVAQCYISDNVYYEIPCPFQGGTDEFTAFFTELNNNSMFRLVNLRGENIPYGYYLVLSSIIR
Ga0308395_10110934F079732AGGAGGMPLMDATKMIEEYTTDFGTKVKNLGIKILEGYADKVSEYTERTEENLCPSGNLFQPRALIATFEDGTKIKYPIGDRSNLVARARELLSNGAVCIDYEGEYWPYVPSTLILGISYRSTPLGGFTNDGSKTTGTFNYQSDILGTVVQPFAIESEPAGLVTTAIACLSGIVYGSGFCTGTRSLNIKARRFRGKGLVAGTTRKTYSRDIKMSSPNPTNCGAANAPNYYCLSYIGESIKNLHLLLPES
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