NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308395_1008059

Scaffold Ga0308395_1008059


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1008059 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4437
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007404Metagenome / Metatranscriptome351Y
F014738Metagenome / Metatranscriptome260Y
F037517Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10080591F037517GGAGGMRVRQIGTLVFDADTNIVVDANNQDAPGIGFRVDSLFDPQPFAVEIAFRRNTRQQALDAVNTLARELHSYAQRRQDGRLAVAGGVLVVAEDATGGASLRSFLRDGSVTLLSVEATATGVLARVRVTGTLIHPFLNYVFTPNSILTLLPYERRAVTLSGLSDAYLYKHRFDCFIYNMTGLYNALLAVEELESATGTSRIQAVNPATASGGIVLQNWNAGWQTLTRANFSSATSGTITYTVGTALPHDVYRLFIEIFCPTTPAANAHYLVSWDGQPQIAETISGDRSWYTPALFVRGDASITLTLEIQNVPTGTLVMPLVLIPTDGVSVWSVITPPTLQSFNIRDLQSTLSRPFETNPSGTVYGAPGFVSSRHIAVFNGVMAPTITNASATLTIRSHRIEPAAFA
Ga0308395_10080594F007404GGAGGVDIVEIFQLLAAGHAGLTAADYLWNAVFGAIGAATAYLADTNGEVFLPRYDAEQHSIELGALGRVLVGAGAGVLVGYSGYIPFIAGVVAPTLLPLLIDKITAFVERRRK
Ga0308395_10080595F014738GGAGGMKLEVLMLVSAFALAFVHPDATQVAATAVVLLLVTRIERGRRARKKRSAPASC

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