Basic Information | |
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Taxon OID | 3300031245 Open in IMG/M |
Scaffold ID | Ga0308395_1007278 Open in IMG/M |
Source Dataset Name | Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4777 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wyoming | |||||||
Coordinates | Lat. (o) | 44.5387 | Long. (o) | -110.798 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002229 | Metagenome / Metatranscriptome | 580 | Y |
F002372 | Metagenome / Metatranscriptome | 566 | Y |
F002795 | Metagenome / Metatranscriptome | 529 | Y |
F004024 | Metagenome / Metatranscriptome | 456 | N |
F007172 | Metagenome / Metatranscriptome | 356 | Y |
F012676 | Metagenome / Metatranscriptome | 278 | Y |
F015735 | Metagenome / Metatranscriptome | 252 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0308395_10072781 | F004024 | N/A | SDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPLIESSAIRQSPGASRTLRDALRALSLEEFVRRRDERRER |
Ga0308395_10072783 | F002229 | GGAGG | VTLLTLDGVEDVDYVPSDAEIRVSLDDCALYGMVLNGVTWMRLVSGAGWWTVVCNRRVTATLAAIGWCWVADGLGARGYWSPALACIPGEVRALCSGCVRDDDDGDDEE |
Ga0308395_10072784 | F002795 | GGAGG | MATGGLVLRGMVASYREFISRKDGKTYRIVTVYGDLVAGEDVLCAIDGYDVFVDSSYARGEMVELPARMQFLRDGSGRPVIRLYVDEGVR |
Ga0308395_10072785 | F002372 | AGGGGG | MPTRREDLLWSVVHRRASHLRALLDVLDDVDMSIAYELHYYPYAIVELLRVRDDAPPVVLRSAYVQANRQWERHSEFALRVVEAALQLVHEYRADPSFSGAEGV |
Ga0308395_10072786 | F015735 | GAGG | MVVYHHWSVEWHPRDNPPHGLPRVVCIARLAVSDPWCGPGPFPADVDRAVRFWNLVASGGARDHGAGYEVVWRLSVVVDGADGDAPPDGAWSDDPVYRARRRLLRWVMRSQCLIPALADHFADDHFRDHPAYFGLLEPGA |
Ga0308395_10072788 | F012676 | GAGG | MNSIKIAAGWDGSPMSLTHPEHGWIRFLEARGIAYAAYLSEPAGWRIVVEDEEKFMRLIPKLRKYNIHGIYTWTYDIHP |
Ga0308395_10072789 | F007172 | AGGAGG | MTTPTALTTLQRRAFAAALRAAKKDEYCRAVGGFVIAHLSDGTIEWFPAGQPPHRGGEPDRNAVILGKWRRNYQRWSRIA |
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