Scaffold Ga0308395_1003349

Overview

Basic Information

• Taxon OID: 3300031245
• Scaffold ID: Ga0308395_1003349
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8396
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002982	Metagenome / Metatranscriptome	515	Y
F006418	Metagenome / Metatranscriptome	373	Y
F007976	Metagenome / Metatranscriptome	341	Y
F025895	Metagenome / Metatranscriptome	199	Y
F032180	Metagenome / Metatranscriptome	180	Y
F044842	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308395_100334911	F002982	AGGAG	VKLQFERHPHSICAVLTEPGECDRIINVARASDAIDVFALDVSPAAYKPLDALFSLPRVVLVEIERREGGWRVEVAYWSKGLGTPAQYETDAATLSEALARCVWALAR
Ga0308395_100334913	F007976	AGGA	MPSTELSGFLRVALDIQATPFPGIHVADGVAVATDGVMLVVKKYNDPVYLRGRGSLSPKAAKVLAALAEATWIGSIEVNGNRVTVTAQSTWYDEKVGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRNIDDAHWYSVAQLRRGLRLFGKNARLSVRQNRDGWLAFNDQWGHTFAVTPFVKRN
Ga0308395_100334915	F006418	AGGAG	MPKRRSEPKPRPAREVVVEEGEDYKIIFDRETRDFAVEFKGAPVGWRASESEARRLVEQLRYEDA
Ga0308395_10033493	F032180	AGGA	MWWKIEPIPRQELEEWTHAVGRFERAAKRDVAVRAAGVFVIYELDGVLGYVAGREAPDGAYLVERWVRKKKGWTLNE
Ga0308395_10033494	F025895	GGTGG	MSDIIAWIIAGGVILALVNSNVADGLLSALDLSDNLKRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDFGEAVALVDVWRRGGLFAPLPDALQGAAVVMAKIGWTFAASFAFEFLAILCAVTALLLAANVRAPGGGGGGR
Ga0308395_10033496	F044842	AGGAG	MEEIELWGGIRGNTFRSTHLVRFIGEYLGMVTIAHADEWVERCVLYRTEDGRVAVHQMRLSLLDDGVDVAEVYVLPALDAGEGERGERL