Scaffold Ga0308395_1002614

Overview

Basic Information

• Taxon OID: 3300031245
• Scaffold ID: Ga0308395_1002614
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10123
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus marinus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5387
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028964	Metagenome / Metatranscriptome	190	N
F029920	Metagenome	187	Y
F059420	Metagenome	134	Y
F061873	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308395_100261410	F061873	AGGAGG	MNEKMNETMTLDDLIRRGVEIREKRIAEERARITAFYEKLARESAEREREIRALLPPPLNELSRVDVGVRHAHIYITEPFPGKGKVRIYASKEDDQWHLLEFAAYNPDGYYLKFQTLEEALAFAAGALEI
Ga0308395_100261413	F029920	GAG	MISAHALERAFQTERPLKGFVVPGLAFSYQPRESLTIGRADRPPDDEDIALVIALAREAFIIIACEPQRKVVASNGVTWYLARWPLQRESVADHLPLEKGDTDEPQPLSPKPSVLRIF
Ga0308395_10026142	F059420	GGAGG	MEIELFRGTSTLTTLHYRNVPGQYSWVLRDFQGDLMDEVEALTRDALGGRTLLIGQQGRARRIVIVLDVQGTSMSNLHAAIRELETHTRWRSNEPPVLVLRVRAQATDPWSLQGVILEQMSAQFEDDQYRATVTLRFACRSVYWREFINTVFSSNNTLTENAFVVNLSTMTFAPITGIADAITNIDYRPASNEWIIFTTTQVWRAPATGGAAALIGSVTGSTGLRGCVAHDGNILAVALGANQLVRFTYPSSAPTVLGSFNGAPFRVRRFGDQYVSVGEFSQYQTTTGLAGMVITNVNGVITNTFSPFPSSVIFPGGGRIRDVLLRDNIGVAIAYRAASPSQSWVVVWSSQVAPYYVAEGASTWGPLEIDQSSATDDVTICADSWIHAGRTFNTLCRLRNLGGIVPYAYPTASVGGVQDGCAVERFTFSTSEPRKAFRLGDDGTAMPLFTASVNSLAVRRVGNLMCIGYATAANVWTPLTVDVSTIANTGATAEIVPRLAGLALPVFSCYSKVDTEILGEVIDPQVQAANYEPKYHGGGTVTPLPGTRYERMFRGSMNEAINRYWFAVGGNVVSAITLNRYKHDWR
Ga0308395_10026143	F028964	AGG	MIGAEVILALTSLRSPGTRTGAIALSGSFERRAMEVAECELEISVRAPSYELSAYGDVLLVMLPDRREYYFVTAIERRNTYYVFRGETFLRYLRDYYPERYAGTSDAQWSGDAAAGVLRSLRPIEYVPVHSFSLSFRDYWIITPDNVPPSVNVSTSFAWASRLEAAQEITRLAHAKGFPLVWWFECGRWCGVKDASGNYGVGPSIALVFAHGLPRNGLFRPRWASSIKYEAWVYDRSQPTAGVALGYGHGRDRDVTRARAARGLFNGWTYWESRIDGRATGTSAAAQAALMRWRPVEAGTGQAYSQEMPRLGDQVFLVAGDNQRCAGIAHVVSERYVVTGGQVSSAEVGVVQI