NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0308395_1002423

Scaffold Ga0308395_1002423


Overview

Basic Information
Taxon OID3300031245 Open in IMG/M
Scaffold IDGa0308395_1002423 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10677
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049663Metagenome / Metatranscriptome146N
F062520Metagenome / Metatranscriptome130N

Sequences

Protein IDFamilyRBSSequence
Ga0308395_10024231F062520N/AMRFDSYKVMTNRRFVAAVAAVPNLKVDELKRLPTFVDERTIPDMGGNLKTWRWTNNSEQYEIYYNEAGILRYHYFTDKISNDAIRVLIDFIRNNRVDANVPNNAFINVSYVFSTTVNQSPDLYGAIIAPAMFLERSNVGLTRGMTSYGFKIANQTYDLVLKAMWESVVIHVELSVVYNTQSVVGLDTVL
Ga0308395_10024234F049663N/AMRAKVLIEKALKQKAFRGALIQSSLNNREYASYRLTEYEKAYSNQDVYEKATLERMFSALPGTATTRGFPNYGVVLQLASLLANVSSFSGFLTIEKTIEQPNFVLHFMDLIGTNVRDRNQPSPVFPTVGPTRYDNSAYGLQTYTTPSTATPLVINNTTFSTAAGLLANAAIPPIMPYTIKIVVKAYTGGSLVATEVFTDNGNGMLVSLGVSSGTITIDPATPIPHIARYGNPSLPPQSTGWDFTINSIQINGPTGSQLVAELSFAFNYTEPIYYPGQEQDERFTLNLTRVVAVNTKPAKLTIELNKQELAAISKSLSQDLQPVIVQRIGEIYNKMVNRYIVRKYMQRFVTDTVNYSDFVIIDVGSPIGGPGGATTPDSTYNQYIPILDRMRGGFEKVRQELHRKSFIANKPTALLCSPKLAYFLARSIMVEQSLWVEEKVTYINDLFGYYIGIPVLIHTELEALDTAFDAWARGTGRPMANSSLDFVTAAVGFAVAILPDNNLAPMVRATFLPPTNTPTVANFNNPLQEAFSMFYQEEVDVVAPELVVPFAVTNMPVS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.